# Config do report.py. Caminhos relativos sao resolvidos a partir da pasta deste arquivo.
sample = OMICS_09
snv_vcf = OMICS_09.snv.hotgenes.acmg.vcf.gz
sv_vcf = OMICS_09.sv.hotgenes.vcf.gz
cnv_vcf = OMICS_09.cnv.annotated.vcf.gz
str_vcf = OMICS_09.str.vcf.gz
dmr_bed = dmrs_table_annotated.bed
region = hotgenes_5kb_hg38.bed
bam = OMICS_09.hotgenes.haplotagged.bam
host = 127.0.0.1
port = 8910

# Colunas pre-selecionadas em cada selectize (separadas por ";"). Tambem gravado
# automaticamente pelo botao "Save Columns" e lido pelo botao "Load Columns".
snv_select_columns = CHROM;POS;REF;ALT;ACMG_PRED;ACMG_PROB
sv_select_columns = CHROM;POS;REF;ALT;AnnotSV_ranking_score;ACMG_class
cnv_select_columns = CHROM;POS;REF;ALT;CLASSIFYCNV_Classification;CLASSIFYCNV_Total_score
str_select_columns = CHROM;POS;REF;ALT;STR_STATUS
dmr_select_columns = chr;start;end;length;nSites;meanMethy1;meanMethy2;diff.Methy;areaStat;annotation_chr;annotation_start;annotation_end;strand;annotation;biotype;gene

# Cor de fundo por valor de celula: coluna[valor1:cor1|valor2:cor2];coluna2[...]
snv_color_columns = ACMG_PRED[Pathogenic:#FF000080|Likely_Pathogenic:#FF000080|VUS:#D3D3D3|Likely_Benign:#00800080|Benign:#008000|Benign_auto:#008000]
sv_color_columns =
cnv_color_columns =
dmr_color_columns =
str_color_columns =

# Paletas de cores disponiveis nos graficos (aba Graphics): Nome[cor1|cor2|...];Nome2[...]
color_palettes = Standard[#1f77b4|#aec7e8|#ff7f0e|#ffbb78|#2ca02c|#98df8a|#d62728|#ff9896|#9467bd|#c5b0d5|#8c564b|#c49c94|#e377c2|#f7b6d2|#7f7f7f|#c7c7c7|#bcbd22|#dbdb8d|#17becf|#9edae5|#393b79|#5254a3|#6b6ecf|#9c9ede|#637939|#8ca252|#b5cf6b|#cedb9c|#8c6d31|#bd9e39]

# Filtros de coluna salvos pelo botao "Save Filter" (JSON, gravado automaticamente)
snv_column_filter =
sv_column_filter =
cnv_column_filter =
dmr_column_filter =
str_column_filter =